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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Biff Pocoroba | 13th | Gerald Laird | 4th | 5th |
| First Basemen | Keith Hernandez | 9th | Tied for 7th | 11th | |
| Second Basemen | Andy Stankiewicz | 7th | Tied for 10th | 11th | |
| Third Basemen | Eric Chavez | 6th | Eric Chavez | 4th | 2nd |
| Shortstops | Gary Gaetti | 6th | Tied for 7th | 9th | |
| Left Fielders | Jim Edmonds | 2nd | Tied for 8th | 7th | |
| Center Fielders | Anthony Gose | 9th | Tied for 7th | 13th | |
| Right Fielders | Jon Nunnally | 5th | Jule Mallonee | 1st | 1st |
| Starting Pitchers | Ben Sheets | 4th | Tied for 8th | 8th | |
| Relievers | Daniel Bard | 15th | Steve Kraly | Tied for 10th | 15th |
| Closers | Moses Yellow Horse | 5th | Dave McCarty | 14th | 11th |
